circRNA basic information
circBase ID: hsa_circ_0006877
Name: hsa_circ_LDLR
Synonym: circRNA LDLR / circLDLR
Host Gene: LDLR
Genomic location(hg19): chr19:11230767-11231198:+
Genomic location(hg38): chr19:11120091-11120522:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor specimens; adjacent normal tissue samples

Cell lines:

MKN-45; AGS; GES-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: CHD1, Ago2
Associated microRNA: miR-449b-5p
Biological function: promotes proliferation and aerobic glycolysis; inhibits apoptosis; promotes tumor growth
Molecular mechanism: acts as an miRNA sponge for miR-449b-5p to regulate CHD1 expression
Biological pathway or process:

proliferation (promotes); glycolysis (promotes); apoptosis (inhibits); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; Transfection; CCK8; EdU Staining; Annexin V/PI Flow Cytometry; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

high expression of circLDLR was correlated with advanced tumor stage and poor differentiation of TNM; potential target for early diagnosis and clinical treatment of GC

Description:

circLDLR (hsa_circ_0006877), derived from LDLR, is up-regulated in gastric cancer tissues and GC cell lines and is mainly localized in the cytoplasm. It promotes GC cell proliferation and aerobic glycolysis and inhibits apoptosis by sponging miR-449b-5p to derepress CHD1, and circLDLR knockdown suppresses xenograft tumor growth.

Confidence score:

0.8439

Other information
Title:

CircRNA LDLR promotes proliferation and aerobic glycolysis of gastric cancer cells by targeting CHD1 with miR-449b-5p.

Journal: Turkish journal of biology = Turk biyoloji dergisi
Published: 2024
PubMed ID: 38665782
Study type:

combined biological and clinical study

Data availability: The datasets used and/or analyzed during the present study are available from the corresponding author upon reasonable request.
Code availability: -