circRNA basic information
circBase ID: hsa_circ_0001013
Name: -
Synonym: circ_0001013
Host Gene: -
Genomic location(hg19): chr2:61339656-61345251:+
Genomic location(hg38): chr2:61112521-61118116:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric cancer tissue; para-carcinoma tissue; adjacent normal tissues

Cell lines:

293T; HEK-293T; RGM-1; MGC-803; SGC-7901; MKN45; HGC-27

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: TWSG1
Associated microRNA: miR-136
Biological function: Promotes gastric cancer cell proliferation, migration, invasion, cell cycle progression and xenograft tumorigenesis, and inhibits apoptosis.
Molecular mechanism: hsa_circ_0001013 acts as a miR-136 sponge to upregulate TWSG1 expression, forming the hsa_circ_0001013/miR-136/TWSG1 axis.
Biological pathway or process:

ceRNA regulation (promotes); proliferation (promotes); migration (promotes); invasion (promotes); apoptosis (inhibits); cell cycle (promotes); angiogenesis (promotes)

Detected method:
Q
M
Validation methods:

RT-qPCR; Microarray; Northern Blot; FISH / smFISH; Clinical Sample Validation; RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Colony Formation Assay; Annexin V/PI Flow Cytometry; Cell Cycle Assay; Transwell Assay; Wound Healing Assay; In Vivo Animal Model; IHC (Immunohistochemistry); Western Blot; Cohort Study; Survival Analysis; Bioinformatics Analysis

Clinical significance:

High circ_0001013 expression is associated with poor prognosis in gastric cancer patients.

Description:

hsa_circ_0001013 is upregulated in gastric cancer tissues and cell lines and its high expression is associated with poor patient survival. Functionally, it promotes proliferation, migration, invasion, cell cycle progression and xenograft tumor growth while inhibiting apoptosis. Mechanistically, hsa_circ_0001013 binds miR-136 and increases TWSG1 expression through a circRNA-miRNA-mRNA regulatory axis.

Confidence score:

0.8192

Other information
Title:

Hsa_circular RNA_0001013 exerts oncogenic effects in gastric cancer through the microRNA-136-TWSG1 axis.

Journal: American journal of translational research
Published: 2022
PubMed ID: 35958507
Study type:

combined biological and clinical study

Data availability: GSE83521; TCGA; GEPIA; KMplot
Code availability: -