circRNA basic information
circBase ID: -
Name: hsa_circ_VAMP3
Synonym: circVAMP3
Host Gene: VAMP3
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
 684, 686
Disease MeSH ID:
 D006528
Disease NCIt ID:
 C3099
Disease ICD11 ID:
 1294035808
Disease OMIM ID:
 114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; adjacent tissues
Cell lines:

SMMC-7721
In vivo animal model:

-
circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: -
Biological function: potential role in mutual interplay between SG-enriched circRNAs and stress granules in HCC (not mechanistically defined)
Molecular mechanism: not specified
Biological pathway or process:

not specified
Detected method:
S
Validation methods:

RNA-seq; Bioinformatics Analysis
Clinical significance:

-
Description:

circVAMP3 is an SG-enriched circRNA reported to be significantly down-regulated in HCC tissues relative to adjacent tissues. The study does not validate its localization, mechanism, or clinical prognostic significance.
Confidence score:

0.1768
Other information
Title:

Screening Linear and Circular RNA Transcripts from Stress Granules.

Journal: Genomics, proteomics & bioinformatics
Published: 2023
PubMed ID: 35085777
Study type:

combined biological and clinical study
Data availability: GSA-Human: HRA001512; https://ngdc.cncb.ac.cn/gsa-human/
Code availability: -