circRNA basic information
circBase ID: -
Name: mmu_circ_HIPK3
Synonym: circRNA homeodomain-interacting protein kinase 3 / circHIPK3
Host Gene: HIPK3
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
1060198
MONDO name: ischemic stroke
Disease details: ischemic stroke / IS
Disease DO ID:
-
Disease MeSH ID:
-
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Mouse
Species details: Mus musculus
Tissue specimen:

ischemic brain tissues; brain tissues; ischemic penumbra; ischemic cortex

Cell lines:

bEnd.3; 293 T

In vivo animal model:

other disease animal model

circRNA-disease information
Expression pattern:
UP
Associated gene: CDK5R1, CDK5, SIRT1, AGO2
Associated microRNA: miR-148b-3p
Biological function: circHIPK3 promotes ischemic stroke-induced BMEC apoptosis, mitochondrial dysfunction, infarct volume, brain water content, neurological deficits, and blood-brain barrier permeability; knockdown of circHIPK3 alleviates cerebral I/R injury.
Molecular mechanism: circHIPK3 acts as a ceRNA sponge for miR-148b-3p, leading to increased CDK5R1/CDK5 expression, reduced SIRT1 expression, and subsequent BMEC apoptosis and mitochondrial dysfunction.
Biological pathway or process:

apoptosis (promotes); mitochondrial function (inhibits); ceRNA regulation (other); other pathway/process (promotes)

Detected method:
Q
S
Validation methods:

circRNA-seq; RT-qPCR; FISH / smFISH; Luciferase Reporter Assay; RNA Pull-Down; RIP (RNA Immunoprecipitation); Transfection; CCK8; Annexin V/PI Flow Cytometry; TUNEL; IHC (Immunohistochemistry); Western Blot; In Vivo Animal Model; Bioinformatics Analysis

Clinical significance:

circHIPK3 could be a key therapeutic target for IS and specific blockade of circHIPK3 is proposed as a promising therapeutic approach for preventing apoptosis and mitochondrial dysfunction in stroke patients.

Description:

This study identified circHIPK3 as an up-regulated circRNA in ischemic brain tissues of tMCAO-induced stroke model mice. circHIPK3 promotes ischemic injury, BMEC apoptosis, and mitochondrial dysfunction by sponging miR-148b-3p, increasing CDK5R1/CDK5 signaling, and suppressing SIRT1. Knockdown of circHIPK3 alleviated cerebral I/R injury, supporting circHIPK3 as a potential therapeutic target for ischemic stroke.

Confidence score:

0.7977

Other information
Title:

circHIPK3 regulates apoptosis and mitochondrial dysfunction induced by ischemic stroke in mice by sponging miR-148b-3p via CDK5R1/SIRT1.

Journal: Experimental neurology
Published: 2022
PubMed ID: 35576990
Study type:

combined biological and bioinformatics study

Data availability: GSE97532; Supplementary data; https://doi.org/10.1016/j.expneurol.2022.114115
Code availability: -