circRNA basic information
circBase ID: hsa_circ_0059961
Name: hsa_circ_ITCH
Synonym: circ_0059961
Host Gene: ITCH
Genomic location(hg19): chr20:33065576-33099197:+
Genomic location(hg38): chr20:34477771-34511392:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0019087
MONDO name: cholangiocarcinoma
Disease details: cholangiocarcinoma / CCA
Disease DO ID:
4947
Disease MeSH ID:
D018281
Disease NCIt ID:
C4436
Disease ICD11 ID:
2110597275
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; adjacent normal tissues; excised tumor mass

Cell lines:

CCLP-1; QBC939; HIBEC

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: SFRP2
Associated microRNA: miR-629-5p
Biological function: Circ_0059961 acts as a tumor suppressor in cholangiocarcinoma, inhibiting tumor cell proliferation, migration, invasion, EMT-related changes and in vivo tumor growth while promoting apoptosis.
Molecular mechanism: Circ_0059961 functions through a ceRNA mechanism by sponging miR-629-5p and thereby increasing SFRP2 expression.
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); apoptosis (promotes); EMT (inhibits); metastasis (inhibits); ceRNA regulation (other)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Clinical Sample Validation; Transfection; CCK8; EdU Staining; Transwell Assay; Western Blot; Luciferase Reporter Assay; In Vivo Animal Model; Survival Analysis; Cohort Study; Bioinformatics Analysis

Clinical significance:

Low circ_0059961 expression was associated with advanced TNM stage, lymph node invasion and poor survival; circ_0059961 could be used as a biomarker for cholangiocarcinoma.

Description:

Circ_0059961 is down-regulated in cholangiocarcinoma tissues and cells and functions as a tumor-suppressive circRNA. Its overexpression suppresses proliferation, migration, invasion, EMT-associated changes and xenograft tumor growth while promoting apoptosis, mainly through the circ_0059961/miR-629-5p/SFRP2 ceRNA axis. Clinically, low circ_0059961 expression is associated with advanced TNM stage, lymph node invasion and worse overall survival.

Confidence score:

0.7887

Other information
Title:

Upregulation of circ_0059961 suppresses cholangiocarcinoma development by modulating miR-629-5p/SFRP2 axis.

Journal: Pathology, research and practice
Published: 2022
PubMed ID: 35490654
Study type:

combined biological and clinical study

Data availability: -
Code availability: -