circRNA basic information
circBase ID: hsa_circ_0005505
Name: hsa_circ_IRAK3
Synonym: hsa_circRNA_005505
Host Gene: IRAK3
Genomic location(hg19): chr12:66597490-66622150:+
Genomic location(hg38): chr12:66203710-66228370:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005291
MONDO name: brain aneurysm
Disease details: intracranial aneurysm
Disease DO ID:
10941
Disease MeSH ID:
D002532
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

ruptured intracranial aneurysm tissues; un-ruptured intracranial aneurysm tissues

Cell lines:

HBVSMCs

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: FUS, DGCR8
Associated microRNA: -
Biological function: promotes proliferation and migration, and suppresses apoptosis of vascular smooth muscle cells
Molecular mechanism: Bioinformatics prediction suggests it may act as a miRNA sponge (circRNA-miRNA-mRNA network) and may encode a PKC_like super family domain; knockdown reduces OPN, YAP1, MMP2 and MMP9 protein levels.
Biological pathway or process:

proliferation (promotes); migration (promotes); apoptosis (inhibits); MAPK (other); NF-kappaB (other); ceRNA regulation (other)

Detected method:
Q
M
Validation methods:

Microarray; RNase R Treatment; RT-qPCR; Clinical Sample Validation; FISH / smFISH; Bioinformatics Analysis; Transfection; MTT; CCK8; Annexin V/PI Flow Cytometry; Western Blot; Wound Healing Assay

Clinical significance:

-

Description:

hsa_circ_0005505 is up-regulated in ruptured intracranial aneurysm tissues versus un-ruptured tissues and promotes HBVSMC proliferation and migration while inhibiting apoptosis. It is mainly localized in the cytoplasm and is associated with predicted circRNA-miRNA-mRNA interactions and potential protein-coding capacity; knockdown decreases OPN, YAP1, MMP2 and MMP9 levels.

Confidence score:

0.697

Other information
Title:

The Potential Role of hsa_circ_0005505 in the Rupture of Human Intracranial Aneurysm.

Journal: Frontiers in molecular biosciences
Published: 2021
PubMed ID: 34336924
Study type:

combined biological and clinical study

Data availability: ArrayExpress E-MTAB-10683
Code availability: -