circRNA basic information
circBase ID: hsa_circ_0025583
Name: hsa_circ_SLCO1B7
Synonym: circSLCO1B7 / circ_0025583
Host Gene: SLCO1B7
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; plasma

Cell lines:

L-02; SK-HEP-1; PLC/PRF/5; Li-7; Huh-7; Hep3B2.1-7

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: DAB2IP, E-cadherin, Vimentin, Snail
Associated microRNA: miR-556-3p, miR-435-3p, miR-635, miR-671-5p, miR-1208
Biological function: Inhibits HCC cell growth, migration and invasion, and promotes apoptosis; suppresses tumor growth in vivo.
Molecular mechanism: Acts as a ceRNA by sponging miR-556-3p to regulate DAB2IP and thereby modulate EMT-related proteins.
Biological pathway or process:

proliferation (inhibits); apoptosis (promotes); migration (inhibits); invasion (inhibits); EMT (inhibits); ceRNA regulation (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Sanger Sequencing; divergent primers PCR; RNase R Treatment; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; RNA Pull-Down; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Transwell Assay; Wound Healing Assay; Annexin V/PI Flow Cytometry; Cell Cycle Assay; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; H&E Staining; Clinical Sample Validation

Clinical significance:

Low circSLCO1B7 expression is associated with TNM stage, lymph node metastasis and tumor size; circSLCO1B7 is decreased in plasma of HCC patients compared with healthy controls, suggesting potential diagnostic value.

Description:

circSLCO1B7 is down-regulated in HCC tissues and patient plasma and functions as a tumor suppressor. It mainly localizes in the cytoplasm and inhibits proliferation, migration/invasion and EMT while promoting apoptosis by sponging miR-556-3p to upregulate DAB2IP.

Confidence score:

0.868

Other information
Title:

circSLCO1B7 suppresses the malignant progression of hepatocellular carcinoma via the miR-556-3p/DAB2IP axis.

Journal: Aging
Published: 2023
PubMed ID: 38015711
Study type:

combined biological and clinical study

Data availability: -
Code availability: -