circRNA basic information
circBase ID: hsa_circ_0003340
Name: hsa_circ_OGDH
Synonym: CircOGDH / circular RNA derived from oxoglutarate dehydrogenase
Host Gene: OGDH
Genomic location(hg19): chr7:44684925-44687358:+
Genomic location(hg38): chr7:44645326-44647759:+
Subcellular localization: cytoplasm; exosome
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
1060198
MONDO name: ischemic stroke
Disease details: ischemic stroke / IS
Disease DO ID:
-
Disease MeSH ID:
-
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

penumbra tissue; brain tissue; plasma; serum; whole blood; plasma exosomes

Cell lines:

HEK-293T; SH-SY5Y

In vivo animal model:

other disease animal model

circRNA-disease information
Expression pattern:
UP
Associated gene: COL4A4, AGO2
Associated microRNA: miR-5112
Biological function: CircOGDH promotes ischemic neuronal injury and neuronal apoptosis, reduces neuronal viability under ischemic conditions, and serves as a predictive blood/exosomal biomarker of ischemic penumbra in AIS.
Molecular mechanism: CircOGDH acts as a miRNA sponge for miR-5112, upregulates COL4A4 expression, promotes neuronal apoptosis/injury under ischemic conditions, and is transported from ischemic brain tissue to peripheral blood through neuron-derived exosomes.
Biological pathway or process:

apoptosis (promotes); ceRNA regulation (other); other pathway/process (promotes)

Detected method:
Q
S
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Actinomycin D / DRB Stability Assay; RT-qPCR; RNA-seq; Microarray; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; TUNEL; In Vivo Animal Model; Western Blot; ROC Analysis; Bioinformatics Analysis

Clinical significance:

CircOGDH is a highly specific and sensitive predictive biomarker for penumbra in patients with AIS; plasma CircOGDH showed an AUC of 0.9326 with sensitivity of 82.22% and specificity of 96.88%, and its expression was positively correlated with penumbra size.

Description:

CircOGDH is up-regulated in ischemic penumbra tissue and in plasma/plasma exosomes of patients with acute ischemic stroke. It promotes ischemic neuronal apoptosis and injury by sponging miR-5112 to increase COL4A4 expression, while knockdown improves neuronal viability and reduces injury. Clinically, circulating/exosomal CircOGDH is proposed as a sensitive and specific predictive biomarker for the presence and size of penumbra in AIS.

Confidence score:

0.8817

Other information
Title:

CircOGDH Is a Penumbra Biomarker and Therapeutic Target in Acute Ischemic Stroke.

Journal: Circulation research
Published: 2022
PubMed ID: 35189704
Study type:

combined biological and clinical study

Data availability: GSE186103; GSE138849
Code availability: -