circRNA basic information
circBase ID: hsa_circ_0070039
Name: hsa_circ_NUP54
Synonym: circNUP54
Host Gene: NUP54
Genomic location(hg19): chr4:77055327-77065626:-
Genomic location(hg38): chr4:76134174-76144473:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; adjacent normal tissues

Cell lines:

SUN387; SNU449; HepG2; Li-7; Huh7; Hep3B; PLC/PRF/5; SMMC-7721; 293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: HuR, BIRC3
Associated microRNA: -
Biological function: promotes proliferation, migration, invasion, tumor growth and metastasis in HCC
Molecular mechanism: circNUP54 binds HuR and promotes its cytoplasmic export/accumulation, enhancing HuR-mediated stabilization of BIRC3 mRNA and activating NF-kappaB signaling
Biological pathway or process:

NF-kappaB (promotes); proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); apoptosis (inhibits)

Detected method:
Q
S
Validation methods:

circRNA-seq; RT-qPCR; divergent primers PCR; Clinical Sample Validation; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; RNA Pull-Down; RIP (RNA Immunoprecipitation); IF (Immunofluorescence); Transfection; CCK8; EdU Staining; Colony Formation Assay; Transwell Assay; Wound Healing Assay; Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry); H&E Staining; RNA-seq; Bioinformatics Analysis; Survival Analysis

Clinical significance:

circNUP54 overexpression was correlated with aggressive cancerous behaviors and poor outcomes; high levels of circNUP54 contributed to unfavorable overall survival (OS) and recurrence-free survival (RFS)

Description:

circNUP54 (hsa_circ_0070039), derived from NUP54, is up-regulated in HCC and predicts poor prognosis. It promotes HCC proliferation, migration/invasion and tumor growth/metastasis by binding HuR, enhancing HuR cytoplasmic export and stabilizing BIRC3 mRNA, which activates NF-kappaB signaling.

Confidence score:

0.8854

Other information
Title:

CircNUP54 promotes hepatocellular carcinoma progression via facilitating HuR cytoplasmic export and stabilizing BIRC3 mRNA.

Journal: Cell death & disease
Published: 2024
PubMed ID: 38443362
Study type:

combined biological and clinical study

Data availability: All data used to support the findings of this study are available from the corresponding author upon request.
Code availability: -