circRNA basic information
circBase ID: hsa_circ_0061587
Name: hsa_circ_RUNX1
Synonym: Circular RNA_0061587
Host Gene: RUNX1
Genomic location(hg19): chr21:36206706-36206898:-
Genomic location(hg38): chr21:34834409-34834601:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0018975
MONDO name: neurofibromatosis type 1
Disease details: neurofibromatosis type 1 / NF1
Disease DO ID:
0111253
Disease MeSH ID:
D009456
Disease NCIt ID:
C3273
Disease ICD11 ID:
337970533
Disease OMIM ID:
162200
Species: Human
Species details: Homo sapiens
Tissue specimen:

-

Cell lines:

ST88-14; T265p21; STS26T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: RUNX1, ANXA11, AGO2
Associated microRNA: miR-485-5p
Biological function: Promotes proliferation, migration and invasion, and inhibits apoptosis of human NF1-associated MPNST cells; functions as an oncogene in NF1-associated MPNST cells.
Molecular mechanism: circ_0061,587 acts as a ceRNA that sequesters miR-485-5p to up-regulate RUNX1 and ANXA11 expression, thereby promoting malignant behaviors of NF1-associated MPNST cells.
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); apoptosis (inhibits); ceRNA regulation (promotes); other pathway/process (promotes)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Annexin V/PI Flow Cytometry; Transwell Assay; Western Blot; Bioinformatics Analysis

Clinical significance:

circ_0061,587 might be a potential diagnostic and prognostic marker or biomarker for NF1.

Description:

circ_0061,587 is up-regulated in human NF1-associated MPNST cell lines and acts as an oncogenic circRNA. It promotes proliferation, migration and invasion while suppressing apoptosis by sponging miR-485-5p and increasing RUNX1 and ANXA11 expression. The study suggests circ_0061,587 may serve as a potential biomarker for NF1.

Confidence score:

0.809

Other information
Title:

Circular RNA_0061587 is associated with the tumorigenesis of neurofibromatosis type 1.

Journal: Neurochemistry international
Published: 2022
PubMed ID: 35181394
Study type:

biological research

Data availability: Supplementary data; https://doi.org/10.1016/j.neuint.2022.105299
Code availability: -