circRNA basic information
circBase ID: hsa_circ_0005529
Name: hsa_circ_VPS33B
Synonym: circRNA_0005529
Host Gene: VPS33B
Genomic location(hg19): chr15:91542906-91543205:-
Genomic location(hg38): chr15:90999676-90999975:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues (tumor); adjacent tissues

Cell lines:

HGC-27; MGC-803; AGS; MKN-45; GES-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: Sp1, Ago2
Associated microRNA: miR-527
Biological function: promotes GC cell proliferation, migration, invasion, tumor growth and metastasis; promotes EMT
Molecular mechanism: circ_0005529 sponges miR-527 to upregulate Sp1, thereby promoting proliferation, migration and EMT in gastric cancer
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); EMT (promotes); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RNase R Treatment; RT-qPCR; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Survival Analysis; Bioinformatics Analysis; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Transfection; MTT; EdU Staining; Colony Formation Assay; Wound Healing Assay; Transwell Assay; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; H&E Staining

Clinical significance:

GC patients with high circ_0005529 expression had a relatively lower survival rate and were associated with poor differentiation, TNM stage and invasion tendency

Description:

circ_0005529 (from VPS33B) is upregulated in gastric cancer and mainly localized in the cytoplasm. It promotes GC cell proliferation, migration/invasion and in vivo tumor growth/metastasis by sponging miR-527 and relieving repression of Sp1, thereby facilitating EMT-related phenotypes.

Confidence score:

0.8457

Other information
Title:

circRNA_0005529 facilitates growth and metastasis of gastric cancer via regulating miR-527/Sp1 axis.

Journal: BMC molecular and cell biology
Published: 2021
PubMed ID: 33472586
Study type:

combined biological and clinical study

Data availability: GSE78092
Code availability: -