circRNA basic information
circBase ID: hsa_circ_0006801
Name: hsa_circ_RNF13
Synonym: circRNF13
Host Gene: RNF13
Genomic location(hg19): chr3:149613259-149639014:+
Genomic location(hg38): chr3:149895472-149921227:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0004844
MONDO name: oral mucosa leukoplakia
Disease details: oral leukoplakia / OLK
Disease DO ID:
 9655
Disease MeSH ID:
 D007972
Disease NCIt ID:
 C3187
Disease ICD11 ID:
 417308277
Disease OMIM ID:
 -
Species: Human
Species details: Homo sapiens
Tissue specimen:

OLK tissues; OLP tissues; oral squamous cell carcinoma tissues; normal oral mucosa tissues / NOM tissues
Cell lines:

-
In vivo animal model:

-
circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: -
Biological function: not specified
Molecular mechanism: not specified
Biological pathway or process:

not specified
Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; RNase R Treatment; Sanger Sequencing
Clinical significance:

-
Description:

circRNF13 (hsa_circ_0006801) is identified as a co-upregulated circRNA in OLK and OLP compared with normal oral mucosa, and its expression trend is consistent between RNA-seq and RT-qPCR validation. It was also tested for circularity/stability by RNase R assay and subjected to Sanger sequencing in this study.
Confidence score:

0.437
Other information
Title:

CircHLA-C: A significantly upregulated circRNA co-existing in oral leukoplakia and oral lichen planus.

Journal: Organogenesis
Published: 2023
PubMed ID: 37531467
Study type:

combined biological and clinical study
Data availability: GSE131567; GSE131568; GSE131182
Code availability: -