circRNA basic information
circBase ID: hsa_circ_0071478
Name: hsa_circ_TENM3
Synonym: circTENM3
Host Gene: TENM3
Genomic location(hg19): chr4:183267803-183268082:+
Genomic location(hg38): chr4:182346650-182346929:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0008315
MONDO name: prostate cancer
Disease details: prostate cancer / PCa
Disease DO ID:
10283
Disease MeSH ID:
D011471
Disease NCIt ID:
C7378
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

PCa tissues; paracancerous tissue; tumor tissue specimens

Cell lines:

PC3; DU145; HEK293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: RUNX3, AGO2
Associated microRNA: miR-558
Biological function: Suppresses proliferation, migration and invasion of prostate cancer cells and inhibits tumor growth.
Molecular mechanism: Acts as a miR-558 sponge (ceRNA-like) to increase RUNX3 expression.
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; Bioinformatics Analysis; RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Transwell Assay; Wound Healing Assay; Western Blot; IF (Immunofluorescence); In Vivo Animal Model

Clinical significance:

Potential biomarker for PCa.

Description:

circTENM3 (hsa_circ_0071478), derived from TENM3, is down-regulated in prostate cancer. It mainly localizes in the cytoplasm and suppresses PCa cell proliferation, migration and invasion and inhibits tumor growth by sponging miR-558 to relieve repression of RUNX3.

Confidence score:

0.7962

Other information
Title:

CircTENM3 inhibites tumor progression via the miR-558/RUNX3 axis in prostate cancer.

Journal: Journal of translational medicine
Published: 2023
PubMed ID: 38007527
Study type:

combined biological and clinical study

Data availability: GSE140927; 10.1186/s12967-023-04708-0
Code availability: -