circRNA basic information
circBase ID: -
Name: hsa_circ_COL1A1
Synonym: circCOL1A1
Host Gene: COL1A1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: Gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric cancer tissue; adjacent normal tissues / non-neoplastic gastric tissues

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: COL1A1
Associated microRNA: hsa-miR-634, hsa-miR-129-5p, hsa-miR-145-5p, hsa-miR-21-3p, hsa-miR-29a-3p, hsa-miR-501-5p
Biological function: Potential biomarker for gastric cancer diagnosis and treatment.
Molecular mechanism: May act as a miRNA sponge and may regulate parental gene transcription.
Biological pathway or process:

ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

RNA-seq; Bioinformatics Analysis; RT-qPCR; divergent primers PCR; Clinical Sample Validation; ROC Analysis

Clinical significance:

AUC=0.94 in distinguishing GC and normal patients (ROC analysis).

Description:

circCOL1A1 is up-regulated in gastric cancer tissues versus adjacent normal tissues and was validated by RT-qPCR. Bioinformatic analyses suggest it may sponge GC-related miRNAs (including hsa-miR-21-3p and hsa-miR-145-5p) and it shows diagnostic potential by ROC analysis (AUC 0.94).

Confidence score:

0.5963

Other information
Title:

Identification of circRNA Biomarker for Gastric Cancer through Integrated Analysis.

Journal: Frontiers in molecular biosciences
Published: 2022
PubMed ID: 35359600
Study type:

combined biological and clinical study

Data availability: China National Center for Bioinformation, accession PRJCA008130; GSE158315
Code availability: -