circRNA basic information
circBase ID: hsa_circ_0046600
Name: hsa_circ_B3GNTL1
Synonym: -
Host Gene: B3GNTL1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissue; adjacent normal tissue

Cell lines:

HL-7702 (L-02); SK-HEP-1; SMMC-7721; HepG2; HuH7; 293T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: HIF-1alpha, N-cadherin
Associated microRNA: miR-640
Biological function: promotes migration of HCC cells
Molecular mechanism: Acts as a ceRNA/miRNA sponge for miR-640, promoting HIF-1alpha expression.
Biological pathway or process:

ceRNA regulation (promotes); migration (promotes); HIF-1 signaling (promotes)

Detected method:
Q
H
M
Validation methods:

Microarray; RT-qPCR; FISH / smFISH; Sanger Sequencing; Actinomycin D / DRB Stability Assay; Luciferase Reporter Assay; Transfection; Wound Healing Assay; Western Blot; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

High hsa-circ-0046600 expression was associated with tumour size, TNM stage and pathological vascular invasion; proposed as a biomarker for HCC diagnosis and disease progression.

Description:

hsa-circ-0046600 is up-regulated in HCC tissues/cell lines and promotes HCC cell migration. It mainly localizes to the cytoplasm and functions as a miR-640 sponge to increase HIF-1alpha (and migration-related N-cadherin) expression, supporting a hsa-circ-0046600/miR-640/HIF-1alpha axis.

Confidence score:

0.7791

Other information
Title:

Emerging Roles Of hsa-circ-0046600 Targeting The miR-640/HIF-1alpha Signalling Pathway In The Progression Of HCC.

Journal: OncoTargets and therapy
Published: 2019
PubMed ID: 31807009
Study type:

combined biological and clinical study

Data availability: GSE97332; TCGA-HCC
Code availability: -