circRNA basic information
circBase ID: -
Name: hsa_circ_SMARCA5
Synonym: -
Host Gene: SMARCA5
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; para-carcinoma tissues; control liver tissues; cirrhosis tissues; plasma

Cell lines:

Huh7; HCCLM9; HepG2

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: MMP7, MMP9
Associated microRNA: -
Biological function: CircSMARCA5 acts as a potential tumor suppressor in HCC; its overexpression inhibits proliferation, promotes apoptosis, and suppresses invasion and metastasis-related features.
Molecular mechanism: Overexpression of circSMARCA5 decreased MMP7 and MMP9 mRNA and protein expression in Huh7 cells; detailed molecular mechanisms in HCC were not determined.
Biological pathway or process:

proliferation (inhibits); apoptosis (promotes); invasion (inhibits); metastasis (inhibits); mRNA stability (other)

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation; Transfection; CCK8; EdU Staining; Annexin V/PI Flow Cytometry; TUNEL; Western Blot; ROC Analysis

Clinical significance:

CircSMARCA5 levels were correlated with tumor differentiation, TNM stage, cancer invasion, and cancer diameter; plasma circSMARCA5 showed diagnostic value for HCC and may serve as a potential prediction and monitor biomarker, especially in patients with low AFP.

Description:

CircSMARCA5 is down-regulated in HCC tissues and plasma, and lower expression is associated with more aggressive clinicopathological features. Functionally, circSMARCA5 overexpression suppresses HCC cell proliferation, invasion/metastasis-related markers, and promotes apoptosis, accompanied by reduced MMP7 and MMP9 expression. Plasma circSMARCA5 shows diagnostic potential for HCC, including in patients with AFP below the cutoff value.

Confidence score:

0.6211

Other information
Title:

Using circular RNA SMARCA5 as a potential novel biomarker for hepatocellular carcinoma.

Journal: Clinica chimica acta; international journal of clinical chemistry
Published: 2019
PubMed ID: 30716279
Study type:

combined biological and clinical study

Data availability: Supplementary data; https:// doi.org/10.1016/j.cca.2019.02.001
Code availability: -