circRNA basic information
circBase ID: hsa_circ_0004771
Name: hsa_circ_NRIP1
Synonym: circ_0004771
Host Gene: NRIP1
Genomic location(hg19): chr21:16386664-16415895:-
Genomic location(hg38): chr21:16386665-16415895:.
Subcellular localization: cytoplasm; exosome
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005580
MONDO name: esophageal squamous cell carcinoma
Disease details: esophageal squamous cell carcinoma / ESCC
Disease DO ID:
3748
Disease MeSH ID:
C562729; D000077277
Disease NCIt ID:
C4024
Disease ICD11 ID:
1417891145
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

plasma; cancer tissues; tumor tissues; adjacent nontumor tissues; plasma exosomes; cultured cell medium

Cell lines:

ECA-109; TE-1; KYSE-150; HEK293T; HEECs; EC9706

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: CDC25A, Ago2
Associated microRNA: miR-339-5p
Biological function: Promotes ESCC cell proliferation, migration and invasion; supports cell-cycle progression; promotes xenograft tumor growth; serves as a less-invasive diagnostic and prognostic biomarker.
Molecular mechanism: hsa circ 0004771 acts as a miR-339-5p sponge and positively regulates CDC25A, thereby promoting ESCC progression partly through CDC25A signaling and cell-cycle progression.
Biological pathway or process:

ceRNA regulation (promotes); proliferation (promotes); migration (promotes); invasion (promotes); cell cycle (promotes); other pathway/process (promotes)

Detected method:
Q
S
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Actinomycin D / DRB Stability Assay; RT-qPCR; RNA-seq; FISH / smFISH; Clinical Sample Validation; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Cell Cycle Assay; Transwell Assay; In Vivo Animal Model; Western Blot; Cohort Study; Survival Analysis; ROC Analysis; Bioinformatics Analysis

Clinical significance:

High expression correlates with heavier tumor burden, T grade, vascular invasion, shorter OS and DFS, and poorer prognosis; plasma hsa circ 0004771 has diagnostic value with ROC AUC 0.816.

Description:

hsa_circ_0004771 is upregulated in ESCC plasma and tumor tissues and high plasma expression predicts poorer OS and DFS. Functionally, it promotes ESCC proliferation, migration, invasion and in vivo tumor growth. Mechanistically, it mainly localizes in the cytoplasm and acts through a miR-339-5p/CDC25A axis, with evidence suggesting tumor-derived exosomal contribution to its plasma abundance.

Confidence score:

0.8867

Other information
Title:

CircRNA hsa_circ_0004771 promotes esophageal squamous cell cancer progression via miR-339-5p/CDC25A axis.

Journal: Epigenomics
Published: 2020
PubMed ID: 32050790
Study type:

combined biological and clinical study

Data availability: Supplementary Table 1; Supplementary Table 3; Supplementary Table 4; Supplementary Table 5; Supplementary Table 6; Supplementary Figures 1-5; www.futuremedicine.com/doi/sup pl/10.2217/epi-2019-0404
Code availability: -