circRNA basic information
circBase ID: hsa_circ_0005505
Name: hsa_circ_IRAK3
Synonym: -
Host Gene: IRAK3
Genomic location(hg19): chr12:66597490-66622150:+
Genomic location(hg38): chr12:66203710-66228370:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
 684, 686
Disease MeSH ID:
 D006528
Disease NCIt ID:
 C3099
Disease ICD11 ID:
 1294035808
Disease OMIM ID:
 114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

peripheral blood mononuclear cells / PBMCs
Cell lines:

-
In vivo animal model:

-
circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: -
Biological function: unknown
Molecular mechanism: -
Biological pathway or process:

not specified
Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Clinical Sample Validation
Clinical significance:

-
Description:

hsa_circ_0005505 is up-regulated in PBMCs of HCC patients versus healthy controls, identified by RNA-seq and confirmed by RT-qPCR in a larger clinical cohort.
Confidence score:

0.3588
Other information
Title:

Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis.

Journal: Cancer medicine
Published: 2019
PubMed ID: 30714679
Study type:

combined biological and clinical study
Data availability: GSE120663
Code availability: https://code.google.com/p/acfs2/