circRNA basic information
circBase ID: -
Name: hsa_circ_SNX27
Synonym: hsa_circ_100338
Host Gene: SNX27
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; pericancerous tissues / pericancerous liver tissues; para-carcinoma tissue

Cell lines:

MHCC97H; HEK293T; Hep3B; BEL7402; HCCLM6; HeLa

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: MTSS1
Associated microRNA: miR-141-3p
Biological function: Promotes metastatic potential (migration/invasion) in liver cancer cells; associated with reduced cumulative survival rate and metastatic progression in hepatitis B virus-infected HCC patients.
Molecular mechanism: Acts as an endogenous sponge for miR-141-3p (direct binding validated by luciferase reporter assay), antagonizing miR-141-3p to regulate invasive potential/metastasis in HCC cells; a potential downstream pathway involving miR-141-3p target MTSS1 is suggested.
Biological pathway or process:

migration (promotes); invasion (promotes); metastasis (promotes); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RNase R Treatment; RT-qPCR; Clinical Sample Validation; Cohort Study; Survival Analysis; Bioinformatics Analysis; Luciferase Reporter Assay; Transfection; Transwell Assay

Clinical significance:

High circRNA_100338 expression is associated with lower cumulative survival rate and metastatic clinicopathological parameters (TNM stage, vascular invasion, lung metastasis) in hepatitis B virus-infected HCC patients; proposed as a biomarker for HCC diagnosis and survival estimation.

Description:

circRNA_100338 is significantly up-regulated in hepatitis B-related HCC tissues and correlates with metastatic features and reduced survival. Mechanistically, it directly binds and sponges miR-141-3p (validated by reporter assays), thereby promoting invasion/metastatic potential in liver cancer cells; a potential downstream involvement of MTSS1 is suggested.

Confidence score:

0.7824

Other information
Title:

Comprehensive circular RNA profiling reveals the regulatory role of the circRNA-100338/miR-141-3p pathway in hepatitis B-related hepatocellular carcinoma.

Journal: Scientific reports
Published: 2017
PubMed ID: 28710406
Study type:

combined biological and clinical study

Data availability: -
Code availability: -