circRNA basic information
circBase ID: hsa_circ_0028171
Name: hsa_circ_ATP2A2
Synonym: circ_0028171
Host Gene: ATP2A2
Genomic location(hg19): chr12:110764194-110771088:+
Genomic location(hg38): chr12:110326389-110333283:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0009807
MONDO name: osteosarcoma
Disease details: osteosarcoma
Disease DO ID:
3347
Disease MeSH ID:
D012516
Disease NCIt ID:
C9145
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

OS tissue; adjacent normal tissue

Cell lines:

HOB1; MG63; Saos-2; U2OS; 143B; MG-63; MG63; 143B; U-2OS

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: IKBKB, AGO2
Associated microRNA: miR-218-5p, miR-1273e
Biological function: promotes OS cell proliferation, migration, invasion and tumor growth
Molecular mechanism: ceRNA/miRNA sponge: circ_0028171 sponges miR-218-5p to increase IKBKB expression
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Nuclear-Cytoplasmic Fractionation; RNase R Treatment; Actinomycin D / DRB Stability Assay; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; Western Blot; Clinical Sample Validation; In Vivo Animal Model

Clinical significance:

potential novel marker for early diagnosis of OS

Description:

circ_0028171 is up-regulated in osteosarcoma tissues and cell lines and mainly localizes to the cytoplasm. It promotes osteosarcoma proliferation, migration, invasion and in vivo tumor growth by sponging miR-218-5p, thereby increasing IKBKB expression.

Confidence score:

0.8228

Other information
Title:

The novel circ_0028171/miR-218-5p/IKBKB axis promotes osteosarcoma cancer progression.

Journal: Cancer cell international
Published: 2020
PubMed ID: 33041665
Study type:

combined biological and clinical study

Data availability: GSE96964
Code availability: -