circRNA basic information
circBase ID: hsa_circ_0087558
Name: -
Synonym: circ_0087558
Host Gene: -
Genomic location(hg19): chr9:96392251-96429522:+
Genomic location(hg38): chr9:93629969-93667240:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007254
MONDO name: breast cancer
Disease details: breast cancer / BC
Disease DO ID:
1612
Disease MeSH ID:
-
Disease NCIt ID:
C9335
Disease ICD11 ID:
1047754165
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

primary breast cancer tissue; brain metastasis tissue

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: MMP2, MAP2K6, PHLDA1, SLC12A2
Associated microRNA: miR-604, miR-1248, miR-643, miR-520h, miR-1305, miR-1290
Biological function: May contribute to brain metastasis in basal-like breast cancer via ceRNA interactions with miRNAs and metastasis-associated mRNAs (e.g., MMP2, MAP2K6).
Molecular mechanism: ceRNA network with miRNA sponging linking circ_0087558 to MMP2 and MAP2K6.
Biological pathway or process:

ceRNA regulation (other); metastasis (promotes)

Detected method:
S
Validation methods:

RNA-seq; Bioinformatics Analysis

Clinical significance:

Might be therapeutic targets or diagnostic biomarkers for basal-like breast cancer brain metastasis (based on bioinformatic analyses; needs experimental validation).

Description:

circ_0087558 is reported as up-regulated in basal-like breast cancer brain metastasis tissues (vs primary) and is predicted to function in a ceRNA network by sponging miRNAs (e.g., miR-1248, miR-604, miR-643) to influence metastasis-related mRNAs such as MMP2 and MAP2K6. The evidence is based on RNA-seq and bioinformatic network analyses without experimental validation.

Confidence score:

0.1768

Other information
Title:

The endogenous association among MMP2/miR-1248/Circ_0087558/miR-643/ MAP2K6 axis can contribute to brain metastasis in basal-like subtype of breast cancer.

Journal: Heliyon
Published: 2024
PubMed ID: 39027611
Study type:

bioinformatics study

Data availability: dbGaP phs000676
Code availability: -