circRNA basic information
circBase ID: hsa_circ_0000508
Name: -
Synonym: circ-001241
Host Gene: -
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; fresh adjacent normal tissue; tumor tissues; metastatic tissue; liver metastatic lesions

Cell lines:

LO2; Huh-7; HepG2; HepG2-SR; Huh7-SR; Huh7

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: TIMP3
Associated microRNA: miR-21-5p
Biological function: Promotes HCC cell proliferation, tumor growth, metastasis, and sorafenib resistance; inhibits apoptosis after sorafenib treatment.
Molecular mechanism: circRNA-001241 functions as a ceRNA that sponges miR-21-5p and upregulates TIMP3 expression, thereby facilitating sorafenib resistance in HCC.
Biological pathway or process:

ceRNA regulation (promotes); proliferation (promotes); apoptosis (inhibits); metastasis (promotes); drug resistance (promotes)

Detected method:
Q
Validation methods:

RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Annexin V/PI Flow Cytometry; Western Blot; In Vivo Animal Model; H&E Staining; IHC (Immunohistochemistry); Survival Analysis; Bioinformatics Analysis

Clinical significance:

High circRNA-001241 expression is associated with larger tumor size, higher TNM stage, inferior overall survival, and recurrence-free survival in HCC patients; circRNA-001241 may be a therapeutic target to overcome sorafenib resistance.

Description:

circRNA-001241 is up-regulated in HCC tissues and sorafenib-resistant HCC cells and is associated with poor prognosis. It promotes proliferation, metastasis, and sorafenib resistance while suppressing apoptosis, mainly by acting as a ceRNA for miR-21-5p to increase TIMP3 expression. Knockdown of circRNA-001241 enhances sorafenib sensitivity in vitro and in a cell line-derived xenograft model.

Confidence score:

0.8595

Other information
Title:

CircRNA-001241 mediates sorafenib resistance of hepatocellular carcinoma cells by sponging miR-21-5p and regulating TIMP3 expression.

Journal: Gastroenterologia y hepatologia
Published: 2022
PubMed ID: 34875312
Study type:

combined biological and clinical study

Data availability: GSE94508; doi:10.1016/j.gastrohep.2021.11.007
Code availability: -