circRNA basic information
circBase ID: hsa_circ_0000009
Name: hsa_circ_SKI
Synonym: circ_0000009
Host Gene: SKI
Genomic location(hg19): chr1:2225564-2225807:+
Genomic location(hg38): chr1:2294125-2294368:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005061
MONDO name: lung adenocarcinoma
Disease details: lung adenocarcinoma / LUAD
Disease DO ID:
3910
Disease MeSH ID:
C538231
Disease NCIt ID:
C3512
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; paracancerous tissues

Cell lines:

BEAS-2B; A549; H1650; H1299

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: PDZD2, IGF2BP2
Associated microRNA: miR-154-3p
Biological function: circ_0000009 acts as a tumor suppressor in LUAD; its overexpression suppresses LUAD cell proliferation and tumor growth and promotes apoptosis.
Molecular mechanism: circ_0000009 upregulates PDZD2 through a ceRNA mechanism by sponging miR-154-3p and stabilizes PDZD2 by recruiting the RBP IGF2BP2.
Biological pathway or process:

proliferation (inhibits); apoptosis (promotes); ceRNA regulation (other); mRNA stability (promotes); other pathway/process (inhibits)

Detected method:
Q
M
Validation methods:

Microarray; Bioinformatics Analysis; RT-qPCR; Clinical Sample Validation; RNase R Treatment; Actinomycin D / DRB Stability Assay; Transfection; CCK8; EdU Staining; Annexin V/PI Flow Cytometry; Western Blot; In Vivo Animal Model; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down

Clinical significance:

circ_0000009 might be considered as a new diagnostic and therapeutic target for LUAD.

Description:

hsa_circ_0000009 (circ_0000009) is downregulated in LUAD tissues and cell lines and functions as a tumor suppressor. Its overexpression inhibits LUAD cell proliferation and xenograft tumor growth while promoting apoptosis, through upregulating PDZD2 via miR-154-3p sponging and IGF2BP2-mediated PDZD2 mRNA stabilization.

Confidence score:

0.8275

Other information
Title:

Effect of circ_0000009 on lung adenocarcinoma progression by regulating PDZD2 in a ceRNA- and RBP- dependent manner.

Journal: Gene
Published: 2023
PubMed ID: 37307895
Study type:

combined biological and clinical study

Data availability: GSE158695; Supplementary data; Data will be made available on request
Code availability: -