circRNA basic information
circBase ID: hsa_circ_0006528
Name: hsa_circ_PRELID2
Synonym: circPRELID2
Host Gene: PRELID2
Genomic location(hg19): chr5:145197456-145205763:-
Genomic location(hg38): chr5:145817893-145826200:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005086
MONDO name: renal cell carcinoma
Disease details: renal cell carcinoma / RCC
Disease DO ID:
4450
Disease MeSH ID:
D002292
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

RCC tissues; adjacent normal tissues / matched healthy tissues; xenograft tumors

Cell lines:

HK2; A498; ACHN; 769-P; 786-O; RCC4; THP-1; 293 T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: ETV1, Ago2
Associated microRNA: miR-22-3p
Biological function: Promotes RCC cell growth, motility (migration), invasion, xenograft tumor growth, and M2-type macrophage polarization; circPRELID2 silencing inhibits these malignant phenotypes.
Molecular mechanism: Acts as a ceRNA/miRNA sponge: circPRELID2 sequesters miR-22-3p, thereby increasing ETV1 expression; the miR-22-3p/ETV1 axis mediates circPRELID2 effects on malignant behaviors.
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); macrophage polarization (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; Microarray; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; Transfection; CCK8; Colony Formation Assay; Cell Cycle Assay; Transwell Assay; Flow Cytometry(Non-apoptosis/cycle); RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; RNA Pull-Down; Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry); Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

High circPRELID2 expression was closely linked to tumor lymph node metastasis and TNM stage, suggesting potential as a biomarker for RCC diagnosis and progression.

Description:

circPRELID2 is up-regulated in renal cell carcinoma and promotes malignant phenotypes (proliferation, migration/motility, invasion) and xenograft tumor growth. Mechanistically, it acts as a miR-22-3p sponge to upregulate ETV1, and its knockdown also weakens M2-type macrophage polarization.

Confidence score:

0.8635

Other information
Title:

CircPRELID2 functions as a promoter of renal cell carcinoma through the miR-22-3p/ETV1 cascade.

Journal: BMC urology
Published: 2024
PubMed ID: 38730434
Study type:

combined biological and clinical study

Data availability: GSE100186
Code availability: -