circRNA basic information
circBase ID: -
Name: hsa_circ_ERBB2
Synonym: circERBB2
Host Gene: ERBB2
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005411
MONDO name: gallbladder cancer
Disease details: gallbladder cancer
Disease DO ID:
3121
Disease MeSH ID:
-
Disease NCIt ID:
C7481
Disease ICD11 ID:
922082116
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

GBC tissue; para-cancer tissue

Cell lines:

SGC-996; GBC-SD; 293 T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: PA2G4, TIFIA, Pol I
Associated microRNA: -
Biological function: promotes GBC cell proliferation and growth by up-regulating Pol I activity and rDNA transcription
Molecular mechanism: circERBB2 accumulates in nucleoli, interacts with PA2G4, regulates nucleolar localization of PA2G4, and enhances TIFIA/Pol I interaction to promote rDNA transcription
Biological pathway or process:

proliferation (promotes); other pathway/process (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; RNase R Treatment; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; RNA Pull-Down; RIP (RNA Immunoprecipitation); Transfection; CCK8; Colony Formation Assay; Luciferase Reporter Assay; Western Blot; Co-IP; In Vivo Animal Model; IHC (Immunohistochemistry); Clinical Sample Validation; Cohort Study; Survival Analysis

Clinical significance:

Increased expression of circERBB2 is associated with worse prognosis of GBC patients.

Description:

circERBB2 is up-regulated in gallbladder cancer and promotes tumor cell proliferation and xenograft growth. Mechanistically, it accumulates in nucleoli, binds PA2G4 and enhances PA2G4 nucleolar localization, strengthening the PA2G4/TIFIA/Pol I machinery to increase rDNA transcription (45S pre-rRNA). High circERBB2 expression is associated with worse overall survival in GBC patients.

Confidence score:

0.8897

Other information
Title:

Circular RNA circERBB2 promotes gallbladder cancer progression by regulating PA2G4-dependent rDNA transcription.

Journal: Molecular cancer
Published: 2019
PubMed ID: 31752867
Study type:

combined biological and clinical study

Data availability: Please contact the corresponding author for all data requests.
Code availability: -