circRNA basic information
circBase ID: hsa_circ_0004798
Name: hsa_circ_GRAMD1B
Synonym: circGRAMD1B
Host Gene: GRAMD1B
Genomic location(hg19): chr11:123464789-123466745:+
Genomic location(hg38): chr11:123594081-123596037:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; noncancerous tissues; xenograft tumors; lung metastasis

Cell lines:

AGS; SGC7901; MKN28; MKN45; MGC803; BGC823; GES-1; HEK-293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: PTEN, p21, AGO2
Associated microRNA: miR-130a-3p
Biological function: inhibits proliferation, migration, and invasion; suppresses tumor growth and lung metastasis
Molecular mechanism: ceRNA mechanism: circGRAMD1B sponges miR-130a-3p to regulate PTEN and p21 expression
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); metastasis (inhibits); EMT (inhibits); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; divergent primers PCR; Sanger Sequencing; FISH / smFISH; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; Transfection; CCK8; EdU Staining; Colony Formation Assay; Transwell Assay; Wound Healing Assay; Western Blot; IF (Immunofluorescence); IHC (Immunohistochemistry); In Vivo Animal Model; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

lower circGRAMD1B expression in GC tissues was correlated with tumor size and T stage

Description:

circGRAMD1B (hsa_circ_0004798), derived from GRAMD1B, is down-regulated in gastric cancer and mainly localized in the cytoplasm. It suppresses GC cell proliferation, migration, invasion and in vivo tumor growth/metastasis by acting as a ceRNA that sponges miR-130a-3p, thereby restoring PTEN and p21 expression.

Confidence score:

0.8635

Other information
Title:

Circular RNA circGRAMD1B inhibits gastric cancer progression by sponging miR-130a-3p and regulating PTEN and p21 expression.

Journal: Aging
Published: 2019
PubMed ID: 31719211
Study type:

combined biological and clinical study

Data availability: -
Code availability: -