circRNA basic information
circBase ID: -
Name: hsa_circ_SMARCA5
Synonym: circSMARCA5
Host Gene: SMARCA5
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0003478
MONDO name: childhood ependymoma
Disease details: pediatric ependymomas
Disease DO ID:
 5509
Disease MeSH ID:
 C531673
Disease NCIt ID:
 C8578
Disease ICD11 ID:
 -
Disease OMIM ID:
 -
Species: Human
Species details: Homo sapiens
Tissue specimen:

ependymoma tissue; healthy control brain tissue (temporal lobe); FFPE tissues
Cell lines:

-
In vivo animal model:

-
circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: -
Biological function: -
Molecular mechanism: -
Biological pathway or process:

not specified
Detected method:
S
Validation methods:

RNA-seq; Bioinformatics Analysis
Clinical significance:

-
Description:

circSMARCA5 is significantly down-regulated in pediatric ependymoma tissue versus controls based on RNA-seq profiling, highlighting it as a potentially disease-associated circRNA (functional mechanism not tested in this study).
Confidence score:

0.1768
Other information
Title:

Distinct circular RNA expression profiles in pediatric ependymomas.

Journal: Brain pathology (Zurich, Switzerland)
Published: 2021
PubMed ID: 33247464
Study type:

combined biological and clinical study
Data availability: -
Code availability: -