circRNA basic information
circBase ID: -
Name: hsa_circ_HIPK3
Synonym: hsa_circRNA_100782
Host Gene: HIPK3
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; adjacent normal tissues

Cell lines:

GES-1; SGC-7901; MKN45; MGC-803; AGS; BGC-823

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: BDNF, Ago2
Associated microRNA: hsa-miR-107
Biological function: Promotes GC cell proliferation and migration; promotes tumorigenesis in vivo.
Molecular mechanism: Acts as a ceRNA/miRNA sponge for miR-107 to upregulate BDNF expression (via Ago2/RISC association).
Biological pathway or process:

proliferation (promotes); migration (promotes); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; divergent primers PCR; RNase R Treatment; Sanger Sequencing; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Transfection; CCK8; Colony Formation Assay; EdU Staining; Transwell Assay; RIP (RNA Immunoprecipitation); Western Blot; In Vivo Animal Model; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

circHIPK3 levels were associated with Tumor & Lymph Node & Metastasis(TNM) stage; ROC AUC=0.743 indicating diagnostic value; described as a potential biomarker/therapeutic target.

Description:

circHIPK3 is upregulated in gastric cancer tissues and cell lines and predominantly localizes to the cytoplasm. It promotes GC cell proliferation and migration and enhances tumor growth in xenografts, mainly by sponging miR-107 to increase BDNF expression (circHIPK3/miR-107/BDNF axis).

Confidence score:

0.8429

Other information
Title:

circHIPK3 Promotes Cell Proliferation and Migration of Gastric Cancer by Sponging miR-107 and Regulating BDNF Expression.

Journal: OncoTargets and therapy
Published: 2020
PubMed ID: 32110057
Study type:

combined biological and clinical study

Data availability: -
Code availability: -