circRNA basic information
circBase ID: hsa_circ_0000144
Name: hsa_circ_SLAMF6
Synonym: -
Host Gene: SLAMF6
Genomic location(hg19): chr1:160472466-160472794:+
Genomic location(hg38): chr1:160502676-160503004:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; adjacent normal tissues

Cell lines:

AGS; MKN-45; GES-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: MYH9
Associated microRNA: miR-204-5p
Biological function: Promotes glycolysis, migration, invasion, and tumor growth in gastric cancer under hypoxia.
Molecular mechanism: Acts as a ceRNA/miRNA sponge for miR-204-5p, thereby regulating MYH9 expression (miR-204-5p/MYH9 axis).
Biological pathway or process:

glycolysis (promotes); migration (promotes); invasion (promotes); proliferation (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation; Survival Analysis; Bioinformatics Analysis; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Transfection; Transwell Assay; Western Blot; In Vivo Animal Model

Clinical significance:

High circSLAMF6 level is associated with shorter survival time in GC patients.

Description:

circSLAMF6 is up-regulated in gastric cancer (including under hypoxia) and promotes glycolysis, migration, invasion, and tumor growth. Mechanistically, circSLAMF6 sponges miR-204-5p to increase MYH9 expression, forming the circSLAMF6/miR-204-5p/MYH9 axis. High circSLAMF6 expression is associated with shorter overall survival in GC patients.

Confidence score:

0.7507

Other information
Title:

Silencing circSLAMF6 represses cell glycolysis, migration, and invasion by regulating the miR-204-5p/MYH9 axis in gastric cancer under hypoxia.

Journal: Bioscience reports
Published: 2020
PubMed ID: 32496549
Study type:

combined biological and clinical study

Data availability: GSE78092
Code availability: -