circRNA basic information
circBase ID: -
Name: hsa_circ_PPARalpha
Synonym: circ5379-6 / hsa-circRNA5379-6
Host Gene: PPARalpha
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

hepatocarcinoma tissues; tumor; lung tissue

Cell lines:

hepG2; 293T; Huh-7; SK-hep-1; huh7; hep-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UN
Associated gene: -
Associated microRNA: -
Biological function: Overexpression of circ5379-6 suppresses HCC cell proliferation, migration, invasion, tumorigenesis and metastasis, and induces apoptosis.
Molecular mechanism: circ5379-6 acts similarly to its linear counterpart PPARalpha to inhibit HCC progression; its overexpression is associated with downregulation of MMP-9, Vimentin and N-cadherin and upregulation of E-cadherin, partially reversing EMT and suppressing cell motility.
Biological pathway or process:

apoptosis (promotes); proliferation (inhibits); migration (inhibits); invasion (inhibits); metastasis (inhibits); EMT (inhibits)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; RT-qPCR; Clinical Sample Validation; Transfection; Colony Formation Assay; Annexin V/PI Flow Cytometry; Cell Cycle Assay; Transwell Assay; In Vivo Animal Model; H&E Staining; IHC (Immunohistochemistry)

Clinical significance:

-

Description:

circ5379-6 is a circular RNA derived from the tumor suppressor PPARalpha. In HCC cell lines and nude mouse models, circ5379-6 overexpression suppresses proliferation, migration, invasion, tumorigenesis and metastasis while inducing apoptosis. Its inhibitory effect is associated with partial reversal of EMT-related changes, including decreased MMP-9, Vimentin and N-cadherin and increased E-cadherin.

Confidence score:

0.7587

Other information
Title:

Circ5379-6, a circular form of tumor suppressor PPARalpha, participates in the inhibition of hepatocellular carcinoma tumorigenesis and metastasis.

Journal: American journal of translational research
Published: 2018
PubMed ID: 30662602
Study type:

biological research

Data availability: -
Code availability: -