circRNA basic information
circBase ID: hsa_circ_0102913
Name: hsa_circ_ATXN3
Synonym: circRNA_0102913
Host Gene: ATXN3
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissue; corresponding adjacent normal tissue

Cell lines:

DLD1; SW480; FHC

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: RAC2 mRNA, NOP2/Sun RNA methyltransferase 5 / NSUN5
Associated microRNA: miR-571
Biological function: circ_0102913 promotes proliferation, colony formation, migration, invasion, and in vivo tumorigenesis of CRC cells.
Molecular mechanism: m5C modification increases circ_0102913 stability and expression; circ_0102913 acts as a ceRNA by sequestering miR-571, thereby restoring RAC2 mRNA expression and promoting malignant progression of CRC cells.
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); ceRNA regulation (promotes); m5A modification (other); mRNA stability (promotes); other pathway/process (promotes)

Detected method:
Q
M
Validation methods:

RT-qPCR; Bioinformatics Analysis; Clinical Sample Validation; RNase R Treatment; Nuclear-Cytoplasmic Fractionation; Transfection; RNA Pull-Down; Luciferase Reporter Assay; Colony Formation Assay; EdU Staining; Transwell Assay; In Vivo Animal Model; Western Blot; RIP (RNA Immunoprecipitation); Actinomycin D / DRB Stability Assay

Clinical significance:

circ_0102913 was significantly highly expressed in clinical CRC tissues, and the authors suggest inhibiting circ_0102913 as a potential therapeutic avenue.

Description:

circ_0102913 is a human ATXN3-derived circRNA that is up-regulated in colorectal cancer tissues and cell lines. It promotes CRC cell proliferation, migration, invasion, and xenograft tumor growth by sponging miR-571 and restoring RAC2 expression. Its elevated expression is attributed at least partly to NSUN5-associated m5C modification, which increases circ_0102913 stability.

Confidence score:

0.8275

Other information
Title:

5-methylcytosine-mediated upregulation of circular RNA 0102913 augments malignant properties of colorectal cancer cells through a microRNA-571/Rac family small GTPase 2 axis.

Journal: Gene
Published: 2024
PubMed ID: 38224924
Study type:

combined biological and clinical study

Data availability: GSE197991; GSE159669; GSE223001; Data will be made available on request
Code availability: -