circRNA basic information
circBase ID: hsa_circ_0009172
Name: -
Synonym: hsa_circRNA_0009172
Host Gene: -
Genomic location(hg19): chr10:70218860-70229920:-
Genomic location(hg38): chr10:68459103-68470163:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric cancer tissues; adjacent normal tissues; mouse tumor tissues

Cell lines:

BGC823; MKN45; HGC27; AGS; MGC803; SGC7901; GES-1; BGC-823

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: NTRK3
Associated microRNA: miR-485-3p
Biological function: hsa_circ_0009172 acts as a tumor suppressor in gastric cancer; overexpression inhibits gastric cancer cell proliferation, viability, clone formation, migration, invasion, EMT-related protein changes, and xenograft tumor growth.
Molecular mechanism: ceRNA mechanism: hsa_circ_0009172 sponges miR-485-3p and regulates the miR-485-3p target NTRK3, thereby attenuating gastric cancer progression.
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); EMT (inhibits); metastasis (inhibits); ceRNA regulation (other); other pathway/process (inhibits)

Detected method:
Q
M
Validation methods:

RT-qPCR; Microarray; FISH / smFISH; Clinical Sample Validation; RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; Survival Analysis; Bioinformatics Analysis

Clinical significance:

Low hsa_circRNA_0009172 expression correlates with poor prognosis, TNM stage, and histological grade in gastric cancer patients; high expression is associated with higher survival rate.

Description:

hsa_circ_0009172 is downregulated in gastric cancer tissues and cell lines, and low expression is associated with poorer patient survival. Functionally, restoring hsa_circ_0009172 suppresses gastric cancer cell proliferation, migration, invasion, EMT, and xenograft growth. Mechanistically, it acts through a hsa_circ_0009172/miR-485-3p/NTRK3 regulatory axis.

Confidence score:

0.8066

Other information
Title:

Circular RNA hsa_circ_0009172 suppresses gastric cancer by regulation of microRNA-485-3p-mediated NTRK3.

Journal: Cancer gene therapy
Published: 2021
PubMed ID: 33531648
Study type:

combined biological and clinical study

Data availability: GSE78092; GSE103236; GEO
Code availability: -