circRNA basic information
circBase ID: -
Name: hsa_circ_HIPK3
Synonym: Circular RNA homeodomain interacting protein kinase 3
Host Gene: HIPK3
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0043797
MONDO name: spinal cord injury
Disease details: spinal cord injury / SCI
Disease DO ID:
-
Disease MeSH ID:
D013119
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

spinal cord tissue; human spinal

Cell lines:

AGE1.HN; PC12

In vivo animal model:

other disease animal model

circRNA-disease information
Expression pattern:
DN
Associated gene: DPYSL5, RNA-induced silencing complex, AGO2
Associated microRNA: miR-558
Biological function: relieves neuronal cell apoptosis; suppresses apoptosis of AGE1.HN and PC12 cells; protective role in reducing apoptosis of neuronal cell in spinal cord injury
Molecular mechanism: circ-HIPK3 acts as a ceRNA/miRNA sponge for miR-558 to up-regulate DPYSL5, thereby modulating neuronal cell apoptosis in SCI
Biological pathway or process:

apoptosis (inhibits); ceRNA regulation (promotes); other pathway/process (other)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Sanger Sequencing; Back-Splice Junction PCR / divergent primers PCR; TUNEL; Western Blot; Annexin V/PI Flow Cytometry; Transfection; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; In Vivo Animal Model; Bioinformatics Analysis

Clinical significance:

-

Description:

This study found that circ-HIPK3 is down-regulated in SCI rat models and CoCl2-induced neuronal cell injury models. Functionally, circ-HIPK3 suppresses neuronal apoptosis and exerts a protective effect in SCI. Mechanistically, circ-HIPK3 acts as a ceRNA for miR-558 to up-regulate DPYSL5, forming a circ-HIPK3/miR-558/DPYSL5 axis.

Confidence score:

0.8152

Other information
Title:

A circRNA derived from linear HIPK3 relieves the neuronal cell apoptosis in spinal cord injury via ceRNA pattern.

Journal: Biochemical and biophysical research communications
Published: 2020
PubMed ID: 32247616
Study type:

biological research

Data availability: Supplementary data to this article can be found online at https://doi.org/10.1016/j.bbrc.2020.02.108
Code availability: -