circRNA basic information
circBase ID: -
Name: hsa_circ_VRK1
Synonym: circVRK1
Host Gene: VRK1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005580
MONDO name: esophageal squamous cell carcinoma
Disease details: esophageal squamous cell carcinoma / ESCC
Disease DO ID:
3748
Disease MeSH ID:
C562729; D000077277
Disease NCIt ID:
C4024
Disease ICD11 ID:
1417891145
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

ESCC tumor tissues; adjacent non-tumor tissues

Cell lines:

KYSE150; KYSE450; EC109; EC9706; Het-1A

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: PTEN, PI3K/AKT signaling pathway
Associated microRNA: miR-624-3p
Biological function: circVRK1 acts as a tumor suppressor in ESCC; overexpression suppresses cell proliferation, migration and EMT, enhances radiosensitivity, and reverses radioresistance.
Molecular mechanism: circVRK1 functions as a ceRNA/molecular sponge for miR-624-3p, positively regulates PTEN, and inactivates the PI3K/AKT signaling pathway.
Biological pathway or process:

PI3K/AKT (inhibits); proliferation (inhibits); migration (inhibits); EMT (inhibits); radioresistance (inhibits); ceRNA regulation (other)

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation; Transfection; CCK8; MTT; Colony Formation Assay; Transwell Assay; Western Blot; IF (Immunofluorescence); Nuclear-Cytoplasmic Fractionation; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Bioinformatics Analysis; Survival Analysis

Clinical significance:

High circVRK1 expression is associated with higher overall survival rate, while downregulation of circVRK1 predicts poor prognosis in ESCC patients; circVRK1 may be a novel biomarker and therapeutic target for ESCC.

Description:

circVRK1 is downregulated in ESCC tissues and cell lines, and higher circVRK1 expression is associated with better overall survival. Functionally, circVRK1 suppresses ESCC cell proliferation, migration, EMT and radioresistance. Mechanistically, circVRK1 sponges miR-624-3p to upregulate PTEN and inhibit PI3K/AKT signaling.

Confidence score:

0.7759

Other information
Title:

CircVRK1 regulates tumor progression and radioresistance in esophageal squamous cell carcinoma by regulating miR-624-3p/PTEN/PI3K/AKT signaling pathway.

Journal: International journal of biological macromolecules
Published: 2019
PubMed ID: 30508543
Study type:

combined biological and clinical study

Data availability: -
Code availability: -