circRNA basic information
circBase ID: hsa_circ_0040705
Name: hsa_circ_USP10
Synonym: CircRNA_0040705
Host Gene: USP10
Genomic location(hg19): chr16:84792321-84801964:+
Genomic location(hg38): chr16:84758715-84768358:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; paracancerous tissues

Cell lines:

L02; SNU-475; SNU-182; HepG2; Hep3B

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: SOX2
Associated microRNA: miR-557
Biological function: promotes HCC cell growth, proliferation, migration, invasion, EMT process, and lung metastasis
Molecular mechanism: circ_0040705 functions as a competitive endogenous RNA sponge for miR-557, down-modulating miR-557 and indirectly up-regulating SOX2 expression
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); metastasis (promotes); EMT (promotes); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

RT-qPCR; Clinical Sample Validation; Bioinformatics Analysis; Transfection; CCK8; EdU Staining; Transwell Assay; Nuclear-Cytoplasmic Fractionation; Luciferase Reporter Assay; Western Blot; In Vivo Animal Model; H&E Staining

Clinical significance:

-

Description:

circ_0040705 is up-regulated in HCC tissues and cell lines. It promotes HCC cell proliferation, migration, invasion, EMT-related changes, and lung metastasis by sponging miR-557 and indirectly increasing SOX2 expression.

Confidence score:

0.6835

Other information
Title:

CircRNA_0040705 promotes the progression of hepatocellular carcinoma.

Journal: IUBMB life
Published: 2022
PubMed ID: 35080329
Study type:

combined biological and clinical study

Data availability: GSE97332; GSE108724; data available from the corresponding author upon request
Code availability: -