circRNA basic information
circBase ID: hsa_circ_0058493
Name: hsa_circ_RHBDD1
Synonym: hsa_-circ_0058493
Host Gene: RHBDD1
Genomic location(hg19): chr2:227729319-227732034:+
Genomic location(hg38): chr2:226864603-226867318:+
Subcellular localization: exosome
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005960
MONDO name: silicosis
Disease details: silicosis
Disease DO ID:
10325
Disease MeSH ID:
D012829
Disease NCIt ID:
C3369
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

peripheral blood lymphocyte; serum; serum exosomes

Cell lines:

MRC-5

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: miR-3175, miR-2278
Biological function: hsa_circ_0058493 may serve as a biomarker for diagnosing silicosis and IPF; its knockdown inhibits fibrotic molecule expression in vitro and may affect epithelial-mesenchymal transition.
Molecular mechanism: hsa_circ_0058493 knockdown inhibited fibrotic molecule expression by affecting the epithelial-mesenchymal transition process; it was predicted to act as a sponge for miR-3175 and miR-2278, potentially modulating downstream signaling pathways and target genes.
Biological pathway or process:

fibrosis (promotes); EMT (promotes); ceRNA regulation (other); PI3K/AKT (promotes)

Detected method:
Q
S
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RT-qPCR; RNA-seq; Microarray; Clinical Sample Validation; Transfection; Western Blot; ROC Analysis; Bioinformatics Analysis

Clinical significance:

hsa_circ_0058493 could potentially serve as a novel biomarker for silicosis and IPF diagnosis; AUC was 0.845 for silicosis and 0.823 for IPF.

Description:

hsa_circ_0058493 is up-regulated in peripheral blood-related samples from silicosis and IPF patients and shows diagnostic biomarker potential for both diseases. In TGF-beta1-treated MRC-5 lung fibroblasts, its expression increases, while siRNA-mediated knockdown reduces fibrotic molecule expression and affects EMT-related markers. The paper further predicts that hsa_circ_0058493 may function through a ceRNA-like mechanism involving miR-3175/miR-2278 and downstream fibrosis-related pathways, although this mechanism was not experimentally confirmed.

Confidence score:

0.7586

Other information
Title:

Peripheral blood circular RNA hsa_circ_0058493 as a potential novel biomarker for silicosis and idiopathic pulmonary fibrosis.

Journal: Ecotoxicology and environmental safety
Published: 2022
PubMed ID: 35378401
Study type:

combined biological and clinical study

Data availability: GSE102660; Supplementary data associated with this article can be found in the online version at doi:10.1016/j.ecoenv.2022.113451; available from the corresponding author upon reasonable request
Code availability: -