circRNA basic information
circBase ID: hsa_circ_0005075
Name: -
Synonym: -
Host Gene: -
Genomic location(hg19): chr1:21377358-21415706:-
Genomic location(hg38): chr1:21050865-21089213:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; adjacent nontumorous tissues / adjacent normal liver tissues

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: dihydrofolate reductase, myosin-1E, fidgetin-like 2
Associated microRNA: hsa-miR-23b-5p, hsa-miR-93-3p, hsa-miR-581, hsa-miR-23a-5p
Biological function: May promote tumor growth and contribute to HCC development; predicted to participate in cell adhesion.
Molecular mechanism: Predicted ceRNA/miRNA sponge mechanism involving hsa-miR-23b-5p, hsa-miR-93-3p, hsa-miR-581 and hsa-miR-23a-5p, with downstream mRNAs predicted by TargetScan and miRanda.
Biological pathway or process:

cell adhesion (other); ceRNA regulation (other); proliferation (promotes); invasion (other); metastasis (other)

Detected method:
Q
M
Validation methods:

Microarray; RNase R Treatment; RT-qPCR; divergent primers PCR; Bioinformatics Analysis; Clinical Sample Validation; ROC Analysis

Clinical significance:

hsa_circ_0005075 expression correlated with HCC tumor size and showed good diagnostic potential (AUROC=0.94; sensitivity 83.3%, specificity 90.0%).

Description:

hsa_circ_0005075 is significantly up-regulated in HCC tissues and is associated with larger tumor size, suggesting a tumor-promoting role. Mechanistically, it is predicted to act as a miRNA sponge (e.g., hsa-miR-23b-5p, hsa-miR-93-3p, hsa-miR-581, hsa-miR-23a-5p) and to be involved in a miRNA-mRNA network enriched for cell-adhesion-related processes. It shows strong diagnostic potential for distinguishing HCC from adjacent nontumorous tissues (AUROC 0.94).

Confidence score:

0.6556

Other information
Title:

Comprehensive Circular RNA Profiling Reveals That hsa_circ_0005075, a New Circular RNA Biomarker, Is Involved in Hepatocellular Crcinoma Development.

Journal: Medicine
Published: 2016
PubMed ID: 27258521
Study type:

combined biological and clinical study

Data availability: -
Code availability: -