circRNA basic information
circBase ID: hsa_circ_0004907
Name: hsa_circ_ZEB1
Synonym: circZEB1
Host Gene: ZEB1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005105
MONDO name: melanoma
Disease details: melanoma
Disease DO ID:
1909
Disease MeSH ID:
D008545
Disease NCIt ID:
C3224
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

-

Cell lines:

IgR39; IgR37; WM115; WM266

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: ZEB1, ZEB1 mRNA
Associated microRNA: hsa-mir200a-3p, hsa-mir141-3p, mir200a
Biological function: circZEB1 participates in the ZEB1-mir200 ceRNA circuit related to melanoma aggressiveness and phenotypic switching; it is reduced in metastatic melanoma cell lines compared with matched primary melanoma cell lines, but remains high and relatively constant during CSC-marker-associated phenotypic switching of IgR39 cells.
Molecular mechanism: ceRNA mechanism involving mir200-family miRNA binding and competition with ZEB1 mRNA; a mathematical model suggests that constant high circZEB1 during phenotypic switching can be explained by a limiting back-splicing factor.
Biological pathway or process:

ceRNA regulation (promotes); EMT (other); stemness (other); metastasis (other)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RT-qPCR; Flow Cytometry(Non-apoptosis/cycle); Bioinformatics Analysis

Clinical significance:

-

Description:

This study investigated circZEB1 in human melanoma cells as part of the ZEB1-mir200 ceRNA circuit related to EMT, aggressiveness, and phenotypic switching. circZEB1 was reduced in metastatic melanoma cell lines relative to matched primary melanoma cell lines, but remained high and relatively constant during CSC-associated phenotypic switching. The authors propose that its constant expression can be explained by a limiting back-splicing factor under high ZEB1 transcription conditions.

Confidence score:

0.4375

Other information
Title:

Cross-Talk Between circRNAs and mRNAs Modulates MiRNA-mediated Circuits and Affects Melanoma Plasticity.

Journal: Cancer microenvironment : official journal of the International Cancer Microenvironment Society
Published: 2019
PubMed ID: 31734859
Study type:

combined biological and bioinformatics study

Data availability: GDC database; GDC data portal RNA-seq data; TCGA-ER-A2NF
Code availability: -