circRNA basic information
circBase ID: hsa_circ_0001681
Name: hsa_circ_RAPGEF5
Synonym: CircRNA RAPGEF5 / cRAPGEF5
Host Gene: RAPGEF5
Genomic location(hg19): chr7:22330793-22357656:-
Genomic location(hg38): chr7:22291174-22318037:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005086
MONDO name: renal cell carcinoma
Disease details: renal cell carcinoma / RCC
Disease DO ID:
4450
Disease MeSH ID:
D002292
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

RCC tissues; adjacent nontumor tissues; RCC tumor tissues; matched adjacent normal tissues

Cell lines:

769-P; Caki-1; OSRC-2; 786-O; Caki1; OSRC2

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: AGO2, TXNIP
Associated microRNA: miR-27a-3p
Biological function: Suppresses RCC proliferation, migration, invasion, tumor growth and metastasis; decreased cRAPGEF5 is associated with RCC progression and poor prognosis.
Molecular mechanism: cRAPGEF5 acts as a miR-27a-3p sponge to prevent TXNIP downregulation, thereby suppressing RCC progression via the miR-27a-3p/TXNIP pathway.
Biological pathway or process:

ceRNA regulation (promotes); proliferation (inhibits); migration (inhibits); invasion (inhibits); metastasis (inhibits)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Actinomycin D / DRB Stability Assay; RT-qPCR; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; RIP (RNA Immunoprecipitation); circRIP; Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Transwell Assay; In Vivo Animal Model; H&E Staining; Western Blot; Cohort Study; Survival Analysis; Bioinformatics Analysis

Clinical significance:

cRAPGEF5 downregulation correlated positively with aggressive clinical characteristics and independently predicted poor overall survival and recurrence-free survival; cRAPGEF5 may serve as a promising prognostic biomarker and novel therapeutic target for RCC patients.

Description:

cRAPGEF5 is a human RAPGEF5-derived circRNA that is significantly downregulated in RCC tissues. It acts as a tumor suppressor by sponging miR-27a-3p and preventing TXNIP downregulation, thereby inhibiting RCC cell proliferation, migration, invasion, tumor growth and metastasis. Clinically, reduced cRAPGEF5 expression is associated with aggressive features and poor OS/RFS, suggesting prognostic and therapeutic potential.

Confidence score:

0.8912

Other information
Title:

CircRNA cRAPGEF5 inhibits the growth and metastasis of renal cell carcinoma via the miR-27a-3p/TXNIP pathway.

Journal: Cancer letters
Published: 2020
PubMed ID: 31629934
Study type:

combined biological and clinical study

Data availability: Supplementary data to this article can be found online at https:// doi.org/10.1016/j.canlet.2019.10.017
Code availability: -