circRNA basic information
circBase ID: hsa_circ_0088046
Name: hsa_circ_SUSD1
Synonym: circ_0088046
Host Gene: SUSD1
Genomic location(hg19): chr9:114860749-114875148:-
Genomic location(hg38): chr9:112098469-112112868:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; adjacent normal tissues; HCC tumour tissues; xenografted tumour tissues

Cell lines:

HCCLM3; Huh-7; THLE-3

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: RTKN2
Associated microRNA: miR-1299
Biological function: Promotes HCC cell proliferation, migration, invasion, motility and tumour formation, and inhibits apoptosis.
Molecular mechanism: circ_0088046 functions as a ceRNA by sponging miR-1299, thereby regulating RTKN2 expression in HCC cells.
Biological pathway or process:

ceRNA regulation (promotes); proliferation (promotes); migration (promotes); invasion (promotes); apoptosis (inhibits); metastasis (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Clinical Sample Validation; Transfection; EdU Staining; Colony Formation Assay; Annexin V/PI Flow Cytometry; Transwell Assay; Western Blot; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); IHC (Immunohistochemistry); In Vivo Animal Model; Bioinformatics Analysis

Clinical significance:

circ_0088046 is proposed as a promising candidate target for the treatment of HCC.

Description:

circ_0088046 is up-regulated in HCC tissues and cells. It promotes HCC cell proliferation, migration, invasion and in vivo tumour growth while suppressing apoptosis. Mechanistically, circ_0088046 acts as a ceRNA sponge for miR-1299 to regulate RTKN2, making it a potential therapeutic target for HCC.

Confidence score:

0.8298

Other information
Title:

Depletion of circ_0088046 suppressed cell growth and motility of hepatocellular carcinoma via circ_0088046-miR-1299-RTKN2 ceRNA pathway.

Journal: Journal of viral hepatitis
Published: 2023
PubMed ID: 37421213
Study type:

combined biological and clinical study

Data availability: GSE94508; GSE97332; available from the corresponding author on reasonable request
Code availability: -