circRNA basic information
circBase ID: hsa_circ_0006990
Name: hsa_circ_VAPA
Synonym: CircVAPA
Host Gene: VAPA
Genomic location(hg19): chr18:9931806-9937063:+
Genomic location(hg38): chr18:9931809-9937066:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0008433
MONDO name: small cell lung carcinoma
Disease details: small cell lung cancer / SCLC
Disease DO ID:
5409, 5411
Disease MeSH ID:
D055752
Disease NCIt ID:
C4917
Disease ICD11 ID:
1800431439
Disease OMIM ID:
182280
Species: Human
Species details: Homo sapiens
Tissue specimen:

SCLC tissues; serum

Cell lines:

H69; DMS79; H82; DMS273; H446; H526

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: AGO2, IGF1R, AKT
Associated microRNA: miR-377-3p, miR-494-3p
Biological function: promotes SCLC progression by increasing cell viability and colony formation, accelerating cell cycle progression, inhibiting apoptosis, and promoting tumor growth in vivo
Molecular mechanism: ceRNA/miRNA sponge mechanism: circVAPA sponges miR-377-3p and miR-494-3p to relieve repression of IGF1R, thereby activating AKT signaling
Biological pathway or process:

PI3K/AKT (promotes); proliferation (promotes); apoptosis (inhibits); cell cycle (promotes); ceRNA regulation (promotes); drug resistance (inhibits)

Detected method:
Q
S
Validation methods:

RNA-seq; Microarray; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Annexin V/PI Flow Cytometry; Cell Cycle Assay; Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry)

Clinical significance:

circVAPA is upregulated in SCLC tissues and serum and is proposed as a promising biomarker and therapeutic target; combination of circVAPA inhibition with BMS-536924 may improve treatment

Description:

circVAPA (hsa_circ_0006990), derived from VAPA, is upregulated in SCLC tissues, serum, and SCLC cell lines. It mainly localizes to the cytoplasm and promotes SCLC proliferation/viability and tumor growth by sponging miR-377-3p and miR-494-3p to increase IGF1R and activate the PI3K/AKT signaling axis, and its depletion enhances response to the IGF1R inhibitor BMS-536924.

Confidence score:

0.8737

Other information
Title:

CircVAPA promotes small cell lung cancer progression by modulating the miR-377-3p and miR-494-3p/IGF1R/AKT axis.

Journal: Molecular cancer
Published: 2022
PubMed ID: 35668527
Study type:

combined biological and clinical study

Data availability: -
Code availability: -