circRNA basic information
circBase ID: hsa_circ_0008496
Name: hsa_circ_PABPC1
Synonym: circ_PABPC1
Host Gene: PABPC1
Genomic location(hg19): chr8:101721360-101725409:-
Genomic location(hg38): chr8:100709132-100713181:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissue; adjacent tissue; paracancerous tissue; adjacent normal mucosa tissues

Cell lines:

AZ521; MGC803; AGS; NUGC3; N87; GES-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: ILK, NF-kappaB p65, NF-kappaB p65 (Ser536)
Associated microRNA: -
Biological function: Promotes proliferation, migration, invasion and tumor growth of gastric cancer cells; protects ILK protein from degradation; activates NF-kappaB signaling; high expression is associated with poor overall survival.
Molecular mechanism: circ_PABPC1 directly binds ILK protein, protects ILK from degradation, promotes ILK-NF-kappaB p65 interaction and phosphorylation of NF-kappaB p65, thereby activating the NF-kappaB signaling pathway.
Biological pathway or process:

NF-kappaB (promotes); proliferation (promotes); migration (promotes); invasion (promotes); apoptosis (inhibits); ubiquitination (inhibits); other pathway/process (promotes)

Detected method:
Q
M
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; Microarray; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; RIP (RNA Immunoprecipitation); RNA Pull-Down; Co-IP; Transfection; MTT; EdU Staining; Transwell Assay; Wound Healing Assay; In Vivo Animal Model; IHC (Immunohistochemistry); Western Blot; Survival Analysis; Bioinformatics Analysis

Clinical significance:

High circ_PABPC1 expression is associated with poor prognosis and poorer overall survival in gastric cancer; circ_PABPC1 has potential as a biomarker of GC.

Description:

circ_PABPC1/hsa_circ_0008496 is up-regulated in gastric cancer tissues and cell lines, and high expression correlates with poor overall survival. Functionally, it promotes proliferation, migration, invasion and xenograft tumor growth of GC cells. Mechanistically, circ_PABPC1 interacts with ILK protein, protects ILK from degradation, and activates NF-kappaB signaling.

Confidence score:

0.8891

Other information
Title:

Circ_PABPC1 promotes the malignancy of gastric cancer through interacting with ILK to activate NF-kappaB pathway.

Journal: Experimental cell research
Published: 2024
PubMed ID: 38688434
Study type:

combined biological and clinical study

Data availability: GSE83521; GSE54129; GSE13911; GSE13861; Supplementary data: https://doi.org/10.1016/j.yexcr.2024.114058
Code availability: -