circRNA basic information
circBase ID: -
Name: hsa_circ_CDR1-AS
Synonym: cerebellar degeneration-related protein 1 transcript / ciRS7
Host Gene: -
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0021063
MONDO name: malignant colon neoplasm
Disease details: colon cancer
Disease DO ID:
219
Disease MeSH ID:
-
Disease NCIt ID:
C9242
Disease ICD11 ID:
1265576634
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

colon cancer cells; xenograft tissues

Cell lines:

SW620; Caco2; 293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: CMTM4, CMTM6, PD-L1
Associated microRNA: microRNA-7, miR7, miR-7
Biological function: CDR1-AS expression increases CMTM4 and CMTM6 transcript levels and cell surface PD-L1 protein levels in colon cancer cells, while cell growth, invasion ability, and angiogenesis were not altered.
Molecular mechanism: CDR1-AS increases CMTM4 and CMTM6 expression and cell surface PD-L1 protein levels through microRNA-7-independent mechanisms; the authors suggest undefined factors, possibly transcription factors, may mediate CMTM4/CMTM6 upregulation.
Biological pathway or process:

immune regulation (promotes); ceRNA regulation (other); other pathway/process (promotes)

Detected method:
Q
B
Validation methods:

RNase R Treatment; Northern Blot; RT-qPCR; Microarray; Transfection; Luciferase Reporter Assay; CCK8; Transwell Assay; Tube Formation Assay; Flow Cytometry(Non-apoptosis/cycle); IHC (Immunohistochemistry); In Vivo Animal Model; Bioinformatics Analysis

Clinical significance:

CDR1-AS expression is linked with poor prognosis, and high CDR1-AS expression levels have been correlated with poor survival in colon cancer patients; the study suggests this may be explained by increased cell surface PD-L1.

Description:

This study shows that CDR1-AS expression in colon cancer cells increases CMTM4 and CMTM6 transcript levels and elevates cell surface PD-L1 protein levels. The PD-L1 increase is not reversed by miR7 mimic overexpression, indicating a microRNA-7-independent mechanism. The authors propose that this onco-immunological effect may help explain the poor prognosis associated with high CDR1-AS expression in colon cancer.

Confidence score:

0.753

Other information
Title:

Expression of circular RNA CDR1‑AS in colon cancer cells increases cell surface PD‑L1 protein levels.

Journal: Oncology reports
Published: 2019
PubMed ID: 31322270
Study type:

biological research

Data availability: GSE125687
Code availability: -