circRNA basic information
circBase ID: hsa_circ_0027089
Name: hsa_circ_PTGES3
Synonym: -
Host Gene: PTGES3
Genomic location(hg19): chr12:57059987-57064148:-
Genomic location(hg38): chr12:56666203-56670364:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatitis B virus (HBV)-related hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

plasma; tumor tissue; peri-tumor tissues

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: hsa-miR-15b-3p, hsa-miR-141-5p, hsa-miR-197-3p, hsa-miR-205-3p, hsa-miR-670-3p
Biological function: Diagnostic biomarker that discriminates HBV-related HCC from cirrhosis and healthy controls.
Molecular mechanism: Predicted miRNA-binding (potential miRNA sponge/miRNA carrier function); no functional mechanism experimentally validated.
Biological pathway or process:

ceRNA regulation (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Sanger Sequencing; RNase R Treatment; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Plasma hsa_circ_0027089 can discriminate HBV-related HCC from HBV-related cirrhosis and healthy participants; diagnostic performance comparable to AFP (ROC/AUC reported).

Description:

Plasma hsa_circ_0027089 is significantly up-regulated in HBV-related HCC and can distinguish HCC patients from HBV-related cirrhosis and healthy controls, showing diagnostic performance comparable to AFP. The study reports its genomic origin from PTGES3 and provides predicted miRNA binding partners, but does not experimentally validate a functional mechanism.

Confidence score:

0.6556

Other information
Title:

Plasma hsa_circ_0027089 is a diagnostic biomarker for hepatitis B virus-related hepatocellular carcinoma.

Journal: Carcinogenesis
Published: 2020
PubMed ID: 31535687
Study type:

combined biological and clinical study

Data availability: Supplementary File 2; Supplementary File 3; Supplementary File 4; Supplementary File 1
Code availability: -