circRNA basic information
circBase ID: hsa_circ_0004277
Name: -
Synonym: circ-0004277
Host Gene: -
Genomic location(hg19): chr10:1125950-1126416:+
Genomic location(hg38): chr10:1080010-1080476:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; paracarcinoma tissues; normal tissues; paired CRC tissues; xenograft tumors

Cell lines:

SW620; LoVo; HT-29; HCT 116; NCM460

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: PTMA
Associated microRNA: miR-512-5p
Biological function: circ-0004277 promotes CRC cell proliferation and inhibits apoptosis; circ-0004277 knockdown restrains CRC cell growth in vivo.
Molecular mechanism: circ-0004277 acts as a miR-512-5p sponge to upregulate PTMA expression, thereby regulating CRC cell proliferation and apoptosis.
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Clinical Sample Validation; Nuclear-Cytoplasmic Fractionation; Bioinformatics Analysis; Luciferase Reporter Assay; Transfection; CCK8; EdU Staining; Annexin V/PI Flow Cytometry; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; Survival Analysis

Clinical significance:

High circ-0004277 expression was associated with advanced tumor stage, larger tumor size, and decreased overall survival in CRC patients.

Description:

hsa_circ_0004277/circ-0004277 is up-regulated in colorectal cancer tissues and cell lines, and high expression is associated with larger tumor size, advanced TNM stage, and poorer overall survival. Functionally, it promotes CRC cell proliferation and inhibits apoptosis, while knockdown restrains xenograft tumor growth. Mechanistically, circ-0004277 functions as a ceRNA sponge for miR-512-5p to upregulate PTMA expression.

Confidence score:

0.7733

Other information
Title:

Circular RNA hsa_circ_0004277 contributes to malignant phenotype of colorectal cancer by sponging miR-512-5p to upregulate the expression of PTMA.

Journal: Journal of cellular physiology
Published: 2020
PubMed ID: 31960446
Study type:

combined biological and clinical study

Data availability: GSE121895; GPL21825
Code availability: -