circRNA basic information
circBase ID: hsa_circ_0004104
Name: hsa_circ_SPARC
Synonym: -
Host Gene: SPARC
Genomic location(hg19): chr5:151043647-151049345:-
Genomic location(hg38): chr5:151664086-151669784:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005010
MONDO name: coronary artery disorder
Disease details: coronary artery disease / CAD
Disease DO ID:
3393
Disease MeSH ID:
D003324
Disease NCIt ID:
C26732
Disease ICD11 ID:
1059873720
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

peripheral blood mononuclear cells (PBMCs); peripheral blood

Cell lines:

THP-1; 293 T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: IDO1, MMP-8, CD40, ApoA I, RNASE1
Associated microRNA: -
Biological function: Serves as a potential diagnostic biomarker and independent predictor for CAD; overexpression in THP-1-derived macrophages positively regulates proatherosclerotic gene expression and negatively regulates antiatherosclerotic gene expression, indicating a potential proatherosclerotic effect.
Molecular mechanism: hsa_circ_0004104 overexpression alters mRNA expression profiles in THP-1-derived macrophages, upregulating proatherosclerotic genes IDO1, MMP-8 and CD40 and downregulating antiatherosclerotic genes ApoA I and RNASE1; corresponding protein changes were confirmed for IDO1, CD40, MMP-8 and ApoA I.
Biological pathway or process:

other pathway/process (promotes); inflammation (promotes); immune regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis; Sanger Sequencing; Transfection; Western Blot; ELISA

Clinical significance:

hsa_circ_0004104 was significantly upregulated in CAD patients, could serve as a potential biomarker for CAD, and was an independent predictor of CAD occurrence with AUC 0.700.

Description:

hsa_circ_0004104 is upregulated in PBMCs from CAD patients and was validated as a potential diagnostic biomarker and independent predictor for CAD. Functionally, its overexpression in THP-1-derived macrophages promotes a proatherosclerotic expression program by increasing IDO1, MMP-8 and CD40 and decreasing ApoA I and RNASE1, suggesting contribution to atherosclerosis and CAD pathogenesis.

Confidence score:

0.7242

Other information
Title:

Identification of circular RNA Hsa_circ_0001879 and Hsa_circ_0004104 as novel biomarkers for coronary artery disease.

Journal: Atherosclerosis
Published: 2019
PubMed ID: 31103880
Study type:

combined biological and clinical study

Data availability: GSE115733; https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE115733; Supplementary data: https://doi.org/10.1016/j.atherosclerosis.2019.05.006
Code availability: -