circRNA basic information
circBase ID: hsa_circ_0003602
Name: hsa_circ_SMARCC1
Synonym: circ_0003602 / circSMARCC1
Host Gene: SMARCC1
Genomic location(hg19): chr3:47702783-47719801:-
Genomic location(hg38): chr3:47661293-47678311:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; normal tissues; tumor tissues

Cell lines:

SW620; LoVo; SW480; HCT-116; NCM460

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: SLC38A1
Associated microRNA: miR-149-5p
Biological function: Promotes CRC cell viability, migration, invasion, angiogenesis, glutaminolysis and tumor growth; inhibits apoptosis.
Molecular mechanism: Acts as a miRNA sponge for miR-149-5p, thereby upregulating SLC38A1 (ceRNA mechanism).
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); migration (promotes); invasion (promotes); angiogenesis (promotes); glutaminolysis (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Transfection; CCK8; Annexin V/PI Flow Cytometry; Transwell Assay; Wound Healing Assay; Tube Formation Assay; Western Blot; IHC (Immunohistochemistry); Luciferase Reporter Assay; Bioinformatics Analysis; Clinical Sample Validation; In Vivo Animal Model; Survival Analysis

Clinical significance:

High circ_0003602 level is associated with lower overall survival and positively correlated with TNM stage in CRC patients.

Description:

hsa_circ_0003602 (circ_0003602/circSMARCC1) is upregulated in colorectal cancer and functions as an oncogenic circRNA. It sponges miR-149-5p to increase SLC38A1, promoting malignant phenotypes including proliferation/viability, migration/invasion, angiogenesis, glutaminolysis, and tumor growth while inhibiting apoptosis; high expression indicates poorer overall survival.

Confidence score:

0.7892

Other information
Title:

Hsa_circ_0003602 Contributes to the Progression of Colorectal Cancer by Mediating the miR-149-5p/SLC38A1 Axis.

Journal: Gut and liver
Published: 2023
PubMed ID: 36148577
Study type:

combined biological and clinical study

Data availability: Supplementary materials can be accessed at https://doi.org/10.5009/gnl210542.
Code availability: -