circRNA basic information
circBase ID: -
Name: hsa_circ_HIPK3
Synonym: CircHIPK3
Host Gene: HIPK3
Genomic location(hg19): chr11:33307958-33309057:.
Genomic location(hg38): chr11:33286412-33287511:.
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004986
MONDO name: urinary bladder carcinoma
Disease details: bladder cancer / BCa
Disease DO ID:
4007
Disease MeSH ID:
-
Disease NCIt ID:
C4912
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

bladder cancer samples

Cell lines:

UMUC3; J82; FL3; HEK293; HepG2; K562; HCT-116

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DS
Associated gene: IGF2BP2, IGF2BP1, STAT3, TP53, GRWD1
Associated microRNA: -
Biological function: Regulates gene expression programs and proliferative/cell-cycle related pathways in bladder cancer cells by modulating IGF2BP2 availability; affects STAT3 and p53 levels; induces IGF2BP2 condensates upon overexpression.
Molecular mechanism: circHIPK3 binds the RBP IGF2BP2 via an 11-mer motif and functions as a ceRNA/competitive binder, altering IGF2BP2 binding to target mRNAs (e.g., STAT3) and likely promoting IGF2BP2 condensation (phase separation) to modulate mRNA stability.
Biological pathway or process:

ceRNA regulation (promotes); proliferation (inhibits); cell cycle (inhibits); other pathway/process (other)

Detected method:
Q
S
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RT-qPCR; RNA-seq; RNase R Treatment; Northern Blot; RIP (RNA Immunoprecipitation); Transfection; Western Blot; IF (Immunofluorescence); Cell Cycle Assay; Clinical Sample Validation; Cohort Study; Survival Analysis; Bioinformatics Analysis

Clinical significance:

High circHIPK3 expression is positively associated with overall survival in bladder cancer patients; circHIPK3 is higher in NMIBC than in MIBC.

Description:

In bladder cancer models, circHIPK3 binds IGF2BP2 through an 11-mer motif and modulates IGF2BP2 engagement with target mRNAs (e.g., STAT3), consistent with an RBP-focused ceRNA-like mechanism affecting mRNA stability. circHIPK3 overexpression promotes formation of IGF2BP2 condensates, suggesting a nucleation/phase-separation component. Clinically, higher circHIPK3 levels are associated with better overall survival in NMIBC cohorts.

Confidence score:

0.8397

Other information
Title:

circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA.

Journal: bioRxiv : the preprint server for biology
Published: 2024
PubMed ID: 37745562
Study type:

combined biological and clinical study

Data availability: GSE148824; ENCODE (https://www.encodeproject.org/)
Code availability: -