circRNA basic information
circBase ID: -
Name: hsa_circ_PTPN22
Synonym: circPTPN22
Host Gene: PTPN22
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007915
MONDO name: systemic lupus erythematosus
Disease details: systemic lupus erythematosus / SLE
Disease DO ID:
9074
Disease MeSH ID:
D008180
Disease NCIt ID:
C3201
Disease ICD11 ID:
749596428
Disease OMIM ID:
152700
Species: Human
Species details: Homo sapiens
Tissue specimen:

peripheral blood mononuclear cells / PBMCs; venous blood

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: IL-7R, IL-18, TNFSF14, CD28
Associated microRNA: miR-200a-3p
Biological function: circPTPN22 may serve as a diagnostic biomarker and disease severity/activity indicator for SLE, with lower expression associated with higher SLEDAI scores and increased expression after hormone treatment.
Molecular mechanism: Bioinformatics-based circRNA-miRNA-mRNA coexpression network suggests that circPTPN22 may function through a circRNA-miRNA sponge mechanism involving immunological regulatory processes.
Biological pathway or process:

ceRNA regulation (other); immune regulation (other)

Detected method:
Q
S
Validation methods:

Sanger Sequencing; RT-qPCR; RNA-seq; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

circPTPN22 is negatively correlated with SLEDAI score, reflects disease status and response to hormone therapy, and has diagnostic value for SLE with ROC AUC 0.918.

Description:

circPTPN22 is a previously undescribed human circRNA derived from PTPN22 and is down-regulated in PBMCs from patients with SLE. Its expression is negatively associated with SLE disease activity, increases after hormone treatment, and shows diagnostic potential; bioinformatics suggests a circPTPN22-miRNA-mRNA immune regulatory network.

Confidence score:

0.5963

Other information
Title:

RNA-seq of circular RNAs identified circPTPN22 as a potential new activity indicator in systemic lupus erythematosus.

Journal: Lupus
Published: 2019
PubMed ID: 30871426
Study type:

combined biological and clinical study

Data availability: -
Code availability: -