circRNA basic information
circBase ID: hsa_circ_0057104
Name: hsa_circ_PDK1
Synonym: circPDK1
Host Gene: PDK1
Genomic location(hg19): chr2:173433468-173457776:+
Genomic location(hg38): chr2:172568740-172593048:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer / CRC
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

CRC tissues; matching normal tissues; human tissues

Cell lines:

LoVo; SW480; Caco2; SW620; HCT116; FHC

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: CCND2
Associated microRNA: miR-627-5p
Biological function: Promotes CRC cell proliferation, invasion, migration and Warburg effect/glycolysis, and inhibits apoptosis.
Molecular mechanism: CircPDK1 acts as a ceRNA by competitively adsorbing miR-627-5p to mediate CCND2 expression.
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); migration (promotes); invasion (promotes); glycolysis (promotes); ceRNA regulation (other)

Detected method:
Q
Validation methods:

RNase R Treatment; Actinomycin D / DRB Stability Assay; RT-qPCR; Clinical Sample Validation; Transfection; CCK8; Annexin V/PI Flow Cytometry; Transwell Assay; Western Blot; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Bioinformatics Analysis

Clinical significance:

circPDK1 is correlated with TNM stage and tumor size in CRC patients and may be a valuable marker for early clinical diagnosis of CRC.

Description:

hsa_circ_0057104/circPDK1 is up-regulated in colorectal cancer tissues and cell lines. It promotes CRC malignant phenotypes, including proliferation, invasion, migration and Warburg effect/glycolysis, while suppressing apoptosis. Mechanistically, circPDK1 acts through a ceRNA axis by sponging miR-627-5p to increase CCND2 expression, and its expression is associated with TNM stage and tumor size.

Confidence score:

0.7936

Other information
Title:

Hsa_circ_0057104, by competitive adsorption of miR-627-5p, mediates CCND2 expression to promote malignant proliferation and Warburg effect of colorectal cancer.

Journal: Biotechnology & genetic engineering reviews
Published: 2024
PubMed ID: 37130193
Study type:

combined biological and clinical study

Data availability: -
Code availability: -